A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv466476



Internal ID15526541
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:107051166..107077209hg38UCSC Ensembl
Innerchr9:109813447..109839490hg19UCSC Ensembl
Innerchr9:108853268..108879311hg18UCSC Ensembl
Innerchr9:106893002..106919045hg17UCSC Ensembl
Cytoband9q31.2
Allele length
AssemblyAllele length
hg3826044
hg1926044
hg1826044
hg1726044
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv542006
Samples1780854326_A
Known GenesMIR548Q
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv466476
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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