A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv466291



Internal ID15526356
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:20817349..20897267hg38UCSC Ensembl
Innerchr9:20817348..20897266hg19UCSC Ensembl
Innerchr9:20807348..20887266hg18UCSC Ensembl
Innerchr9:20807348..20887266hg17UCSC Ensembl
Cytoband9p21.3
Allele length
AssemblyAllele length
hg3879919
hg1979919
hg1879919
hg1779919
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv541877
SamplesNINDS_145
Known GenesFOCAD
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv466291
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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