A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv465171



Internal ID15178550
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:142662001..142785320hg38UCSC Ensembl
Innerchr7:142369835..142493129hg19UCSC Ensembl
Innerchr7:142049398..142193132hg18UCSC Ensembl
Innerchr7:141856113..141999847hg17UCSC Ensembl
Cytoband7q34
Allele length
AssemblyAllele length
hg38123320
hg19123295
hg18143735
hg17143735
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv841n27
Supporting Variantsnssv541027
SamplesHGDP01205
Known GenesMTRNR2L6, PRSS1, PRSS2, PRSS3P2
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv465171
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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