A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv463946



Internal ID15524011
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:91001154..91059889hg38UCSC Ensembl
Innerchr6:91710872..91769607hg19UCSC Ensembl
Innerchr6:91767593..91826328hg18UCSC Ensembl
Innerchr6:91767593..91826328hg17UCSC Ensembl
Cytoband6q15
Allele length
AssemblyAllele length
hg3858736
hg1958736
hg1858736
hg1758736
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv539959
Samples1780862014_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv463946
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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