A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv462980



Internal ID15523045
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:65329708..65373887hg38UCSC Ensembl
Innerchr6:66039601..66083780hg19UCSC Ensembl
Innerchr6:66096322..66140501hg18UCSC Ensembl
Innerchr6:66096322..66140501hg17UCSC Ensembl
Cytoband6q12
Allele length
AssemblyAllele length
hg3844180
hg1944180
hg1844180
hg1744180
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv539022
Samples1787431198_A
Known GenesEYS
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv462980
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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