A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv462968



Internal ID15523033
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:64261543..64308792hg38UCSC Ensembl
Innerchr6:64971436..65018685hg19UCSC Ensembl
Innerchr6:65029395..65076644hg18UCSC Ensembl
Innerchr6:65029395..65076644hg17UCSC Ensembl
Cytoband6q12
Allele length
AssemblyAllele length
hg3847250
hg1947250
hg1847250
hg1747250
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv539016
SamplesNINDS_222
Known GenesEYS
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv462968
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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