A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv462840



Internal ID15522905
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:104347464..104368704hg38UCSC Ensembl
Innerchr1:104890086..104911326hg19UCSC Ensembl
Innerchr1:104691609..104712849hg18UCSC Ensembl
Innerchr1:104602107..104623347hg17UCSC Ensembl
Cytoband1p21.1
Allele length
AssemblyAllele length
hg3821241
hg1921241
hg1821241
hg1721241
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv538923
SamplesHGDP00925
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv462840
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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