A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv462024



Internal ID15175403
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:26874532..26900794hg38UCSC Ensembl
Innerchr5:26874641..26900903hg19UCSC Ensembl
Innerchr5:26910398..26936660hg18UCSC Ensembl
Innerchr5:26910398..26936660hg17UCSC Ensembl
Cytoband5p14.1
Allele length
AssemblyAllele length
hg3826263
hg1926263
hg1826263
hg1726263
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv538316
SamplesHGDP00023
Known GenesCDH9
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv462024
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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