A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv461885



Internal ID15175264
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:27565..118291hg38UCSC Ensembl
Innerchr5:27564..118406hg19UCSC Ensembl
Innerchr5:80564..171406hg18UCSC Ensembl
Innerchr5:80564..171406hg17UCSC Ensembl
Cytoband5p15.33
Allele length
AssemblyAllele length
hg3890727
hg1990843
hg1890843
hg1790843
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv538212
SamplesHGDP00099
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv461885
Frequency
Sample Size1557
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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