A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv460919



Internal ID15520984
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:162081302..162376642hg38UCSC Ensembl
Innerchr3:161799090..162094430hg19UCSC Ensembl
Innerchr3:163281784..163577124hg18UCSC Ensembl
Innerchr3:163281792..163577132hg17UCSC Ensembl
Cytoband3q26.1
Allele length
AssemblyAllele length
hg38295341
hg19295341
hg18295341
hg17295341
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv537397
SamplesHGDP01336
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv460919
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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