A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv460757



Internal ID15520822
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:87814130..87900583hg38UCSC Ensembl
Innerchr3:87863280..87949733hg19UCSC Ensembl
Innerchr3:87945970..88032423hg18UCSC Ensembl
Innerchr3:87945970..88032423hg17UCSC Ensembl
Cytoband3p11.1
Allele length
AssemblyAllele length
hg3886454
hg1986454
hg1886454
hg1786454
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv537269
SamplesHGDP00041
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv460757
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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