A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv460584



Internal ID15520649
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:65190441..65229010hg38UCSC Ensembl
Innerchr3:65176116..65214685hg19UCSC Ensembl
Innerchr3:65151156..65189725hg18UCSC Ensembl
Innerchr3:65151156..65189725hg17UCSC Ensembl
Cytoband3p14.1
Allele length
AssemblyAllele length
hg3838570
hg1938570
hg1838570
hg1738570
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv606n27
Supporting Variantsnssv537125
SamplesHGDP01310
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv460584
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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