A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv460564



Internal ID15520629
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:59835345..59942001hg38UCSC Ensembl
Innerchr3:59821071..59927727hg19UCSC Ensembl
Innerchr3:59796111..59902767hg18UCSC Ensembl
Innerchr3:59796111..59902767hg17UCSC Ensembl
Cytoband3p14.2
Allele length
AssemblyAllele length
hg38106657
hg19106657
hg18106657
hg17106657
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv537110
SamplesHGDP01203
Known GenesFHIT
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv460564
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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