A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv460397



Internal ID15520462
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:8784055..8821239hg38UCSC Ensembl
Innerchr3:8825741..8862925hg19UCSC Ensembl
Innerchr3:8800741..8837925hg18UCSC Ensembl
Innerchr3:8800741..8837925hg17UCSC Ensembl
Cytoband3p25.3
Allele length
AssemblyAllele length
hg3837185
hg1937185
hg1837185
hg1737185
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv596n27
Supporting Variantsnssv536983
SamplesHGDP00584
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv460397
Frequency
Sample Size1557
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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