A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv460300



Internal ID15520365
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:40338..143598hg38UCSC Ensembl
Innerchr3:82010..185281hg19UCSC Ensembl
Innerchr3:57010..160281hg18UCSC Ensembl
Innerchr3:57010..160281hg17UCSC Ensembl
Cytoband3p26.3
Allele length
AssemblyAllele length
hg38103261
hg19103272
hg18103272
hg17103272
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv584n27
Supporting Variantsnssv536901
SamplesHGDP00183
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv460300
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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