A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv459477



Internal ID15172856
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:22357414..22881878hg38UCSC Ensembl
Innerchr22:22711762..23224058hg19UCSC Ensembl
Innerchr22:21041762..21554058hg18UCSC Ensembl
Innerchr22:21036316..21548612hg17UCSC Ensembl
Cytoband22q11.22
Allele length
AssemblyAllele length
hg38524465
hg19512297
hg18512297
hg17512297
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv551n27
Supporting Variantsnssv536214
Samples1780854522_A
Known GenesGGTLC2, LOC648691, MIR650, POM121L1P, PRAME, ZNF280A, ZNF280B
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv459477
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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