A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4577857



Internal ID19961046
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr20:58398719..58398720hg38UCSC Ensembl
chr20:56973775..56973776hg19UCSC Ensembl
Cytoband20q13.32
Allele length
AssemblyAllele length
hg38545
hg19545
Variant TypeCNV sva insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv16034408
Samples
Known GenesVAPB
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4577857
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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