A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv457288



Internal ID15170667
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:100884530..100924371hg38UCSC Ensembl
Innerchr15:101424735..101464576hg19UCSC Ensembl
Innerchr15:99242258..99282099hg18UCSC Ensembl
Innerchr15:99242258..99282099hg17UCSC Ensembl
Cytoband15q26.3
Allele length
AssemblyAllele length
hg3839842
hg1939842
hg1839842
hg1739842
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv534514
SamplesHGDP01012
Known GenesALDH1A3, LRRK1
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv457288
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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