A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv457231



Internal ID15517296
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:86338430..86371858hg38UCSC Ensembl
Innerchr15:86881661..86915089hg19UCSC Ensembl
Innerchr15:84682665..84716093hg18UCSC Ensembl
Innerchr15:84682665..84716093hg17UCSC Ensembl
Cytoband15q25.3
Allele length
AssemblyAllele length
hg3833429
hg1933429
hg1833429
hg1733429
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv534464
Samples1787431198_A
Known GenesAGBL1
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv457231
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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