A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv457208



Internal ID15170587
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:78615690..78727268hg38UCSC Ensembl
Innerchr15:78908032..79019610hg19UCSC Ensembl
Innerchr15:76695087..76806665hg18UCSC Ensembl
Innerchr15:76695087..76806665hg17UCSC Ensembl
Cytoband15q25.1
Allele length
AssemblyAllele length
hg38111579
hg19111579
hg18111579
hg17111579
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv534446
SamplesNINDS_105
Known GenesCHRNA3, CHRNB4
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv457208
Frequency
Sample Size1557
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer