A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv457183



Internal ID15170562
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:65293399..65337844hg38UCSC Ensembl
Innerchr15:65585737..65630182hg19UCSC Ensembl
Innerchr15:63372790..63417235hg18UCSC Ensembl
Innerchr15:63372790..63417235hg17UCSC Ensembl
Cytoband15q22.31
Allele length
AssemblyAllele length
hg3844446
hg1944446
hg1844446
hg1744446
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv534428
Samples1780854216_A
Known GenesIGDCC3
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv457183
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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