A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv457143



Internal ID15517208
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:53283455..53311491hg38UCSC Ensembl
Innerchr15:53575652..53603688hg19UCSC Ensembl
Innerchr15:51362944..51390980hg18UCSC Ensembl
Innerchr15:51362944..51390980hg17UCSC Ensembl
Cytoband15q21.3
Allele length
AssemblyAllele length
hg3828037
hg1928037
hg1828037
hg1728037
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv534401
Samples1782681112_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv457143
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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