A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4567108



Internal ID20296993
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:40927163..40932696hg38UCSC Ensembl
chr17:39083415..39088948hg19UCSC Ensembl
Cytoband17q21.2
Allele length
AssemblyAllele length
hg385534
hg195534
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15788519
Samples
Known GenesKRT23
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4567108
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


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