A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4562161



Internal ID20292047
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:134881172..134881173hg38UCSC Ensembl
chr5:134216862..134216863hg19UCSC Ensembl
Cytoband5q31.1
Allele length
AssemblyAllele length
hg38374
hg19374
Variant TypeCNV sva insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv16063770
Samples
Known GenesTXNDC15
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4562161
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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