A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4560005



Internal ID20289888
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr20:3527318..3536112hg38UCSC Ensembl
chr20:3507965..3516759hg19UCSC Ensembl
Cytoband20p13
Allele length
AssemblyAllele length
hg388795
hg198795
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15789192
Samples
Known GenesATRN
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4560005
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


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