A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv455850



Internal ID15515915
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr13:28417851..28477194hg38UCSC Ensembl
Innerchr13:28991988..29051331hg19UCSC Ensembl
Innerchr13:27889988..27949331hg18UCSC Ensembl
Innerchr13:27889988..27949331hg17UCSC Ensembl
Cytoband13q12.3
Allele length
AssemblyAllele length
hg3859344
hg1959344
hg1859344
hg1759344
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv533317
Samples1780854101_A
Known GenesFLT1
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv455850
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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