A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4558477



Internal ID20288357
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:28706249..28706847hg38UCSC Ensembl
chr1:29032761..29033359hg19UCSC Ensembl
Cytoband1p35.3
Allele length
AssemblyAllele length
hg38599
hg19599
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv48n166
Supporting Variantsnssv15789154
Samples
Known GenesGMEB1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4558477
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer