A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4535635



Internal ID19918979
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr22:41804994..42050996hg38UCSC Ensembl
chr22:42200998..42447000hg19UCSC Ensembl
Cytoband22q13.2
Allele length
AssemblyAllele length
hg38246003
hg19246003
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15967985
Samples
Known GenesCCDC134, CENPM, LINC00634, MIR33A, SEPT3, SHISA8, SREBF2, TNFRSF13C, WBP2NL
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4535635
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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