A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4535422



Internal ID20265464
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr20:3156092..3159076hg38UCSC Ensembl
chr20:3136738..3139722hg19UCSC Ensembl
Cytoband20p13
Allele length
AssemblyAllele length
hg382985
hg192985
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15856463
Samples
Known GenesFASTKD5, UBOX5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4535422
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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