A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4531526



Internal ID19914956
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:15775685..16723886hg38UCSC Ensembl
chr17:15678999..16627200hg19UCSC Ensembl
Cytoband17p11.2
Allele length
AssemblyAllele length
hg38948202
hg19948202
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15959941
Samples
Known GenesADORA2B, CCDC144A, CENPV, FAM211A, FAM211A-AS1, MEIS3P1, MIR1288, NCOR1, PIGL, SNORD49A, SNORD49B, SNORD65, TRPV2, TTC19, UBB, ZNF287, ZNF624, ZSWIM7
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4531526
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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