A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4523154



Internal ID19906584
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:172986841..172989583hg38UCSC Ensembl
chr5:172413844..172416586hg19UCSC Ensembl
Cytoband5q35.1
Allele length
AssemblyAllele length
hg382743
hg192743
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15977801
Samples
Known GenesATP6V0E1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4523154
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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