A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4516854



Internal ID19900284
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrY:22320852..22531853hg38UCSC Ensembl
chrY:24466999..24678000hg19UCSC Ensembl
CytobandYq11.223
Allele length
AssemblyAllele length
hg38211002
hg19211002
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15991004
Samples
Known GenesPRY, PRY2, RBMY1F, RBMY1J, TTTY6, TTTY6B
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4516854
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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