Variant DetailsVariant: nsv442912 | Internal ID | 15154945 | | Landmark | | | Location Information | | | Cytoband | 4q21.3 | | Allele length | | Assembly | Allele length | | hg38 | 3851 | | hg19 | 3851 | | hg18 | 3851 | | hg17 | 3851 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | nssv1625369, nssv1625872, nssv1625311, nssv1624954, nssv1625920, nssv1626122, nssv1626497, nssv1625002, nssv1626118, nssv1625339, nssv1626504, nssv1625480, nssv1626552, nssv1626452, nssv1626430, nssv1625044, nssv1625552, nssv1625670, nssv1625142, nssv1625595, nssv1626449, nssv1625706, nssv1625460, nssv1626218, nssv1625378, nssv1625375, nssv1624948, nssv1625486, nssv1625163, nssv1626542, nssv1626034, nssv1626587, nssv1625816, nssv1625687, nssv1625080 | | Samples | NA11830, NA18862, NA18508, NA12801, NA12146, NA19098, NA12750, NA07357, NA19192, NA12812, NA18860, NA12891, NA19130, NA12005, NA19159, NA19239, NA10847, NA19194, NA12753, NA12878, NA19142, NA18856, NA18857, NA18523, NA19132, NA18858, NA19206, NA11881, NA18863, NA12057, NA19140, NA19240, NA12763, NA18506, NA12154 | | Known Genes | MAPK10 | | Method | SNP array | | Analysis | We used two computational approaches to identify CNVs: the hidden Markov model Birdseye, and an approach based on correlation between nearby probes across a population sample. To maximize the quality of reported findings, we ran duplicate experiments in independent labs, and report the CNVs that were observed in both experiments, in the same samples and at essentially identical genomic locations. | | Platform | [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array | | Comments | | | Reference | McCarroll_et_al_2008 | | Pubmed ID | 18776908 | | Accession Number(s) | nsv442912
| | Frequency | | Sample Size | 270 | | Observed Gain | 0 | | Observed Loss | 35 | | Observed Complex | 0 | | Frequency | n/a |
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