Variant Details

Variant: nsv442598

Internal ID

15501317

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:5766850..5787909	hg38	UCSC Ensembl
Inner	chr11:5788080..5809139	hg19	UCSC Ensembl
Inner	chr11:5744656..5765715	hg18	UCSC Ensembl
Inner	chr11:5744656..5765715	hg17	UCSC Ensembl

Cytoband

11p15.4

Allele length

Assembly	Allele length
hg38	21060
hg19	21060
hg18	21060
hg17	21060

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv1642426, nssv1642411, nssv1642444, nssv1642443, nssv1642410, nssv1642365, nssv1642378, nssv1642400, nssv1642367, nssv1642395, nssv1642394, nssv1642366, nssv1642409, nssv1642413, nssv1642436, nssv1642404, nssv1642421, nssv1642373, nssv1642437, nssv1642442, nssv1642449, nssv1642383, nssv1642425, nssv1642427, nssv1642399, nssv1642392, nssv1642377, nssv1642414, nssv1642374, nssv1642454, nssv1642417, nssv1642419, nssv1642376, nssv1642406, nssv1642439, nssv1642368, nssv1642445, nssv1642420, nssv1642386, nssv1642447, nssv1642407, nssv1642405, nssv1642416, nssv1642385, nssv1642372, nssv1642398, nssv1642434, nssv1642384, nssv1642403, nssv1642448, nssv1642429, nssv1642388, nssv1642435, nssv1642438, nssv1642408, nssv1642393, nssv1642401, nssv1642396, nssv1642450, nssv1642402, nssv1642428, nssv1642451, nssv1642381, nssv1642424, nssv1642422, nssv1642387, nssv1642390, nssv1642452, nssv1642391, nssv1642432, nssv1642430, nssv1642379, nssv1642375, nssv1642370, nssv1642418, nssv1642371, nssv1642440, nssv1642380, nssv1642412, nssv1642369, nssv1642389, nssv1642382, nssv1642433, nssv1642446, nssv1642397, nssv1642441, nssv1642453, nssv1642415, nssv1642431, nssv1642423

Samples

NA19141, NA12717, NA19222, NA18621, NA11995, NA10851, NA18855, NA18507, NA19145, NA12751, NA12004, NA12146, NA18959, NA18870, NA12750, NA12155, NA12813, NA19192, NA19005, NA18940, NA12812, NA19201, NA10846, NA18995, NA10854, NA12762, NA19130, NA18611, NA12761, NA19137, NA11994, NA19172, NA19128, NA18966, NA19159, NA18990, NA19239, NA11993, NA18951, NA18605, NA19210, NA12760, NA12752, NA12753, NA12003, NA10863, NA19152, NA12872, NA19161, NA18529, NA18871, NA19103, NA18572, NA18976, NA11839, NA10838, NA12234, NA19221, NA19202, NA19142, NA11840, NA12056, NA12239, NA18853, NA12264, NA19101, NA12144, NA06985, NA19160, NA19132, NA18570, NA18576, NA18632, NA19206, NA12716, NA18564, NA12057, NA10861, NA12874, NA18594, NA19143, NA18501, NA12740, NA18609, NA18972, NA18872, NA18552, NA19129, NA18577, NA18620

Known Genes

OR52N1, OR52N5

Method

SNP array

Analysis

We used two computational approaches to identify CNVs: the hidden Markov model Birdseye, and an approach based on correlation between nearby probes across a population sample. To maximize the quality of reported findings, we ran duplicate experiments in independent labs, and report the CNVs that were observed in both experiments, in the same samples and at essentially identical genomic locations.

Platform

[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array

Comments

Reference

McCarroll_et_al_2008

Pubmed ID

18776908

Accession Number(s)

nsv442598

Frequency

Sample Size	270
Observed Gain	0
Observed Loss	90
Observed Complex	0
Frequency	n/a