A curated catalogue of human genomic structural variation

Variant Details

Variant: nsv437769

Internal ID15036501
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:94169862..94170142hg38UCSC Ensembl
Outerchr12:94167771..94175584hg38UCSC Ensembl
Innerchr12:94563638..94563918hg19UCSC Ensembl
Outerchr12:94561547..94569360hg19UCSC Ensembl
Innerchr12:93087769..93088049hg18UCSC Ensembl
Outerchr12:93085678..93093491hg18UCSC Ensembl
Innerchr12:93066106..93066386hg16UCSC Ensembl
Outerchr12:93064015..93071828hg16UCSC Ensembl
Allele length
AssemblyAllele length
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv467650
Known GenesPLXNC1
MethodSNP array
AnalysisOur algorithm aims to detect deletions that are transmitted from a hemizygous parent to a child. For each trio, every SNP was coded into one of seven categories: (A) Type I mendelian incompatibility (that is, consistent with deletion) involving mother; (B) Type I mendelian incompatibility involving father; (C) Type II mendelian incompatibility (that is, inconsistent with deletion); (D) child homozygous or missing data, both parents homozygous or missing data; (E) child homozygous or missing data, father heterozygous, mother homozygous or missing data; (F) child homozygous or missing data, mother heterozygous, father homozygous or missing data; (G) child heterozygous or both parents heterozygous (see Supplementary Methods for further details). SNPs were assigned to states D-G only if they did not contain mendelian incompatibilities. A run of consecutive SNPs in a particular trio was considered to be consistent with a maternal transmitted deletion if all SNPs were in states A, D or E, or with a paternal deletion if all SNPs were in states B, D or F.
PlatformNot reported
Pubmed ID16327808
Accession Number(s)nsv437769
Sample Size60
Observed Gain0
Observed Loss1
Observed Complex0

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