A curated catalogue of human genomic structural variation

Variant Details

Variant: nsv437712

Internal ID15036444
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:30151369..30155196hg38UCSC Ensembl
Outerchr11:30143725..30332178hg38UCSC Ensembl
Innerchr11:30172916..30176743hg19UCSC Ensembl
Outerchr11:30165272..30353725hg19UCSC Ensembl
Innerchr11:30129492..30133319hg18UCSC Ensembl
Outerchr11:30121848..30310301hg18UCSC Ensembl
Innerchr11:30137225..30141052hg16UCSC Ensembl
Outerchr11:30129581..30318034hg16UCSC Ensembl
Allele length
AssemblyAllele length
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv467593
Known GenesARL14EP, FSHB
MethodSNP array
AnalysisOur algorithm aims to detect deletions that are transmitted from a hemizygous parent to a child. For each trio, every SNP was coded into one of seven categories: (A) Type I mendelian incompatibility (that is, consistent with deletion) involving mother; (B) Type I mendelian incompatibility involving father; (C) Type II mendelian incompatibility (that is, inconsistent with deletion); (D) child homozygous or missing data, both parents homozygous or missing data; (E) child homozygous or missing data, father heterozygous, mother homozygous or missing data; (F) child homozygous or missing data, mother heterozygous, father homozygous or missing data; (G) child heterozygous or both parents heterozygous (see Supplementary Methods for further details). SNPs were assigned to states D-G only if they did not contain mendelian incompatibilities. A run of consecutive SNPs in a particular trio was considered to be consistent with a maternal transmitted deletion if all SNPs were in states A, D or E, or with a paternal deletion if all SNPs were in states B, D or F.
PlatformNot reported
Pubmed ID16327808
Accession Number(s)nsv437712
Sample Size60
Observed Gain0
Observed Loss1
Observed Complex0

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