A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv437693



Internal ID8350093
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:113154953..113178958hg38UCSC Ensembl
Outerchr10:113151320..113240255hg38UCSC Ensembl
Innerchr10:114914712..114938717hg19UCSC Ensembl
Outerchr10:114911079..115000014hg19UCSC Ensembl
Innerchr10:114904702..114928707hg18UCSC Ensembl
Outerchr10:114901069..114990004hg18UCSC Ensembl
Innerchr10:114579299..114603304hg16UCSC Ensembl
Outerchr10:114575666..114664601hg16UCSC Ensembl
Cytoband10q25.3
Allele length
AssemblyAllele length
hg3888936
hg1988936
hg1888936
hg1688936
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv467574
SamplesNA18872
Known GenesTCF7L2
MethodSNP array
AnalysisOur algorithm aims to detect deletions that are transmitted from a hemizygous parent to a child. For each trio, every SNP was coded into one of seven categories: (A) Type I mendelian incompatibility (that is, consistent with deletion) involving mother; (B) Type I mendelian incompatibility involving father; (C) Type II mendelian incompatibility (that is, inconsistent with deletion); (D) child homozygous or missing data, both parents homozygous or missing data; (E) child homozygous or missing data, father heterozygous, mother homozygous or missing data; (F) child homozygous or missing data, mother heterozygous, father homozygous or missing data; (G) child heterozygous or both parents heterozygous (see Supplementary Methods for further details). SNPs were assigned to states D-G only if they did not contain mendelian incompatibilities. A run of consecutive SNPs in a particular trio was considered to be consistent with a maternal transmitted deletion if all SNPs were in states A, D or E, or with a paternal deletion if all SNPs were in states B, D or F.
PlatformNot reported
Comments
ReferenceConrad_et_al_2006
Pubmed ID16327808
Accession Number(s)nsv437693
Frequency
Sample Size60
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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