A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4337301



Internal ID20186661
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:87954356..87989642hg38UCSC Ensembl
chr3:88003506..88038792hg19UCSC Ensembl
Cytoband3p11.1
Allele length
AssemblyAllele length
hg3835287
hg1935287
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15789837
Samples
Known GenesHTR1F
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4337301
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


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