A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4333740



Internal ID19839304
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:142194282..142463462hg38UCSC Ensembl
chr3:141913124..142182304hg19UCSC Ensembl
Cytoband3q23
Allele length
AssemblyAllele length
hg38269181
hg19269181
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15789916
Samples
Known GenesATR, GK5, XRN1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4333740
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


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