A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4325740



Internal ID19838623
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:183382729..187257917hg38UCSC Ensembl
chr2:184247457..188122644hg19UCSC Ensembl
Cytoband2q32.1
Allele length
AssemblyAllele length
hg383875189
hg193875188
Variant TypeOTHER inversion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv16091314
Samples
Known GenesFAM171B, FSIP2, ITGAV, ZC3H15, ZNF804A, ZSWIM2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4325740
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


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