A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4323672



Internal ID20185170
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:183956000..183957048hg38UCSC Ensembl
chr1:183925134..183926182hg19UCSC Ensembl
Cytoband1q25.3
Allele length
AssemblyAllele length
hg381049
hg191049
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15789011
Samples
Known GenesCOLGALT2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4323672
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


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