A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4290405



Internal ID20121026
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr20:35537289..35544950hg38UCSC Ensembl
chr20:34125113..34132701hg19UCSC Ensembl
Cytoband20q11.22
Allele length
AssemblyAllele length
hg387662
hg197589
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15965514
Samples
Known GenesERGIC3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4290405
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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