A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4289860



Internal ID20120791
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr20:38087393..38229862hg38UCSC Ensembl
chr20:36715795..36858264hg19UCSC Ensembl
Cytoband20q11.23
Allele length
AssemblyAllele length
hg38142470
hg19142470
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15965555
Samples
Known GenesKIAA1755, RPRD1B, TGM2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4289860
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer