A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4271551



Internal ID20459182
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:57539275..57541131hg38UCSC Ensembl
chr19:58050643..58052499hg19UCSC Ensembl
Cytoband19q13.43
Allele length
AssemblyAllele length
hg381857
hg191857
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15845628
Samples
Known GenesZNF549
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4271551
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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