A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4269646



Internal ID20111140
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:50996906..51043168hg38UCSC Ensembl
chr19:51500162..51546425hg19UCSC Ensembl
Cytoband19q13.41
Allele length
AssemblyAllele length
hg3846263
hg1946264
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15960540
Samples
Known GenesKLK10, KLK11, KLK12, KLK8, KLK9
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4269646
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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