A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4268188



Internal ID20110117
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr18:47816990..47873362hg38UCSC Ensembl
chr18:45343361..45399733hg19UCSC Ensembl
Cytoband18q21.1
Allele length
AssemblyAllele length
hg3856373
hg1956373
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15960671
Samples
Known GenesSMAD2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4268188
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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