A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4267416



Internal ID20456278
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr18:6867824..6873685hg38UCSC Ensembl
chr18:6867823..6873684hg19UCSC Ensembl
Cytoband18p11.31
Allele length
AssemblyAllele length
hg385862
hg195862
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15837906
Samples
Known GenesARHGAP28
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4267416
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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