A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4261778



Internal ID20452336
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:15389059..15395984hg38UCSC Ensembl
chr19:15499870..15506795hg19UCSC Ensembl
Cytoband19p13.12
Allele length
AssemblyAllele length
hg386926
hg196926
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15843309
Samples
Known GenesAKAP8L
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4261778
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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