A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4259213



Internal ID20450544
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr20:5607689..5660827hg38UCSC Ensembl
chr20:5588335..5641473hg19UCSC Ensembl
Cytoband20p12.3
Allele length
AssemblyAllele length
hg3853139
hg1953139
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15965930
Samples
Known GenesGPCPD1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4259213
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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