A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4256855



Internal ID20448881
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:42352982..42373982hg38UCSC Ensembl
chr17:40505000..40526000hg19UCSC Ensembl
Cytoband17q21.2
Allele length
AssemblyAllele length
hg3821001
hg1921001
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15834481
Samples
Known GenesSTAT3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4256855
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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